YouGenMap: a web platform for dynamic multi-comparative mapping and visualization of genetic maps
نویسندگان
چکیده
Comparative genetic maps are used in examination of genome organization, detection of conserved gene order, and exploration of marker order variations. YouGenMap is an open-source web tool that offers dynamic comparative mapping capability of users' own genetic mapping between 2 or more map sets. Users' genetic map data and optional gene annotations are uploaded, either publically or privately, as long as they follow our template which is available in several standard file formats. Data is parsed and loaded into MySQL relational database to be displayed and compared against users' genetic maps or other public data available on YouGenMap. With the highly interactive GUIs, all public data on YouGenMap are maps available for visualization, comparison, search, filtration and download. YouGenMap web tool is available on the website (http://conifergdb.miamioh.edu/yougenmap) with the source-code repository at (http://sourceforge.net/projects/yougenmap/?source=directory).
منابع مشابه
Radiology, nuclear medicine, and medical imaging: a bibliometric study in Iran
Introduction: Nowadays, science mapping is considered an excellent technique for decision-makers to find solutions for problems in research planning and development. In this work, we aimed to depict a science map of “radiology, nuclear medicine, and medical imaging” in Iran. Methods: All publications indexed in Thomson Reuters Web of Science database in the fields mentioned above with at least...
متن کاملCMap3D: a 3D visualization tool for comparative genetic maps
UNLABELLED Genetic linkage mapping enables the study of genome organization and the association of heritable traits with regions of sequenced genomes. Comparative genetic mapping is particularly powerful as it allows translation of information between related genomes and gives an insight into genome evolution. A common tool for the storage, comparison and visualization of genetic maps is CMap. ...
متن کاملOptimal Trajectory Planning of a Mobile Robot with Spatial Manipulator For Spatial Obstacle Avoidance
Mobile robots that consist of a mobile platform with one or many manipulators mounted on it are of great interest in a number of applications. Combination of platform and manipulator causes robot operates in extended work space. The analysis of these systems includes kinematics redundancy that makes more complicated problem. However, it gives more feasibility to robotic systems because of the e...
متن کاملA Comparative Study of SVM and RF Methods for Classification of Alteration Zones Using Remotely Sensed Data
Identification and mapping of the significant alterations are the main objectives of the exploration geochemical surveys. The field study is time-consuming and costly to produce the classified maps. Therefore, the processing of remotely sensed data, which provide timely and multi-band (multi-layer) data, can be substituted for the field study. In this study, the ASTER imagery is used for altera...
متن کاملSimplifying Gene Expression Microarray Comparative Analysis
Gene Expression Comparative Analysis allows bioinformatics researchers to discover the conserved or specific functional regulation of genes. This is achieved through comparisons between quantitative gene expression measurements obtained in different species on different platforms to address a particular biological system. Comparisons are made more difficult due to the need to map orthologous ge...
متن کامل